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Data Collection with EPU

Category: Microscope operations
Sub-category: Data Collection and software

Use EPU software to collect data on cryoEM grids.

Safety

You must complete all required safety training at the center you are visiting before hands on training. Coordinate this with the user office or training coordinator.

Background

Relevant Training Modules (to review until you can pass the knowledge test):

SOP for EPU Data Collection with K3 and Falcon 4 (for review before demonstration)

Additional reference information:

The pass/fail knowledge assessment will test your understanding of the following concepts:

  • The EPU interface: Preparation, Atlas, Autofunctions, and EPU
  • Principles of low dose imaging.
  • Recognizing issues that require staff assistance.
  • Recognizing “good” screening images.
  • Be able to set up data collection on good areas

Here is the current quiz:

A workflow demonstration should be scheduled with center staff. The demonstration will cover all points of the SOP. You must have passed the knowledge quiz and reviewed the SOP and tutorial videos before the demonstration.

The Data Collection with EPU badge is specific for use at S2C2, so there is no added site specific SOP.

Schedule your supervised practice with the user office or appointed user coordinator. This can be scheduled for the same session as the demonstration. During supervised practice, center staff will be present for the full duration of the session to provide feedback and answer questions with the goal that you can pass the practical test for independence with no assistance. The number of supervised practice sessions will be tailored to the user, and if necessary, more than one session can be scheduled before taking the practical test.

Center staff will assist in arranging time for access to the necessary equipment and testing for independence. The practical test can not be scheduled during the same session as supervised practice.

A data collection with EPU checklist will be used by the certifying staff to test for proper use of the instrument with a pass/fail outcome. All steps on the checklist must be performed to pass. You may use any instructions normally posted as a guide during the session.

Additional information:

Recertification period

  • Microscope operation merit badges are valid for 9 months.
  • Recertification (to maintain active status) requires demonstrating proper use and care in front of a center staff member.